 | |
Input Window Diffusion Weighted Images Diffusion Tensor Estimation 4th-order Diffusion Tensor Estimation Supported File Formats |
| Diffusion Tensor Estimation |
1. The Diffusion Tensor Image form can be accessed by clicking on the "DTI" tab at the top of the application window.
2. The main area of the window shows a part of a slice from a computed Diffusion Tensor image.
3. The image can be zoomed in/out by moving the slider on the bottom left.
4. You can page through the slices of a Diffusion-Weighted MR volume by moving the slider on the top left.
5. A field of Diffusion Tensors can be estimated from the opened Diffusion-Weighted MR dataset by clicking on the "Estimate Tensors" button (using an implementation of the method presented in Barmpoutis et al. ISBI 2010). The progress of the estimation is shown on the bottom. At the end, the average processing time is reported on the bottom.
6. The S0 can be simultaneously estimated along with the 6 unknown tensor coefficients. This option can also be turned off, and use an acquired S0 image instead.
7. Various scalar fields can be computed from the estimated Diffusion Tensor field: Mean Diffusivity, Fractional Anisotropy, Directional Color Map etc. Use the drop box to select one of these options.
8. The primary eigen-vector field of the estimated tensors can also be shown. The width and length of the vectors can be adjusted by moving the corresponding sliders appropriately.
Saved data: The saved data are in the fanDTasia FDT format and can be visualized using the following Matlab command: A=openFDT('filename');plotTensors(A([1:6],:,:,slice),0.9,[81 1 0]); (the fanDTasia Matlab toolbox is required).